Its funny you say that, as we used to have a STO bot.. :) But I dropped it because nobody was running it.. this was about 2 years ago .
Yeah, unless more people suggest it, I wouldn't bother with it. Aside from a farming mission or two, I can't think of any missions off the top of my head that ...

I was taking a look at my game list, and Rift is the only one I can really think of. Archage might be nice, although the last few times I tried to play that on the F2P server, I keep getting kicked off within about 5 minutes.
I also play STO, but that would probably be difficult with the 3D starship ...